fwdpy
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  • fwdpy: forward simulation in Python using fwdpp
  • Changelog (rough)
  • TODO
  • Modules in this package
  • A note for R users
  • Fitness models
  • Theoretical details
  • References
  • Example: modeling changes in population size
  • Complex demographic operations
  • Example: Modeling regional variation in mutation and recombination
  • Calculating summary statistics
  • Processing SLiM input files
  • How many threads to use?
  • Example: background selection
  • Example of taking ‘views’ from simulated populations
  • Example: Sliding windows
  • Tracking mutation frequencies
  • Copying populations in memory
  • Estimating cumulative in simulations of quantitative traits.
  • Overview
  • Implementing custom fitness functions
  • Source code organization
  • Extending fwdpy
fwdpy
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