fwdpy
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fwdpy: forward simulation in Python using fwdpp
Changelog (rough)
TODO
Modules in this package
A note for R users
Fitness models
Theoretical details
References
Example: modeling changes in population size
Complex demographic operations
Example: Modeling regional variation in mutation and recombination
Calculating summary statistics
Processing SLiM input files
How many threads to use?
Example: background selection
Example of taking ‘views’ from simulated populations
Example: Sliding windows
Tracking mutation frequencies
Copying populations in memory
Estimating cumulative in simulations of quantitative traits.
Overview
Implementing custom fitness functions
Source code organization
Extending
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